PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G019600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 324aa    MW: 34661.9 Da    PI: 9.9953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G019600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.29.3e-3035147199
                         EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                         f+kv tpsdv+k++rlv+pk++ae++             gg   ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD
  Brast02G019600.1.p  35 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldstqaaasstGGG--GGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGD 123
                         89*************************998888777665333..7789******************************************* PP

                         EEEEE..E-SS.SEE..EEEEE-S CS
                  B3  79 fvvFk..ldgr.sefelvvkvfrk 99 
                         +v F   + ++  +++l++ ++r+
  Brast02G019600.1.p 124 TVSFGrgVGSEaAKGRLFIDWRRR 147
                         ****95433556888888888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-3927156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2832130IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-2433127No hitNo description
PROSITE profilePS5086313.32435148IPR003340B3 DNA binding domain
SMARTSM010191.3E-2135148IPR003340B3 DNA binding domain
PfamPF023629.8E-2735147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEFTAIRSPA SGRTSELDGG PSSTTTDPVE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY  60
FPLDSTQAAA SSTGGGGGLL LSFEDRTGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKRLD  120
AGDTVSFGRG VGSEAAKGRL FIDWRRRPDN SMASAALPPY GGRRFTALLP NSVPFAPWTM  180
AARAQQQGQH PFFSGSGGRA AAFVPQPPPS FVYDDGCYGA APGGHGGGRQ VLYYRPQQQQ  240
HAAVVLESVP VRMGMAAMAA AAAVPSSGTK RVRLFGVNLD SEEEDSNYSR PALSTMQLMS  300
PASSTSTSSS SAGKARCSLN LDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-453214711117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104912e-65AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBankCP0126112e-65CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8332962e-65CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558950.11e-161PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-103Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLI1HAE41e-161I1HAE4_BRADI; Uncharacterized protein
STRINGBRADI1G77150.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-59B3 family protein